MiDiv pipelines for sequence data processing
Amplicon Illumina data processing
Taxonomic assignment of amplicon data
Illumina metagenome processing - MAGmachine
Below are links to the GitHub-sites for some
R-packages we develop.
R-packages available on CRAN
microseq
is an R-package with some basic functions for handling microbial genomics
sequence data.
micropan
is an R-package for microbial pan-genomics.
microclass
is an R-package for 16S-based taxonomic classification.
microcontax
is an R-package with training data for 16S-based taxonomic classification.
Other R-packages
microRMS
is an R-package for analyzing Reduced Metagenome Sequencing data.