Master projects in microbial genomics
A reduced version of some of these may also be used for Bachelor projects.
Feel free to also suggest some projects on your own. Send me an email if you want to discuss this with me.
Ongoing master projects
Nora Bull: Ethnicity-associated evolutionary patterns in human microRNA (collaboration with Simon Rayner, UiO)
Kristin Kleivan Solberg: Stress-tolerance associated genes and antimicrobial resistance (collaboration with Dzung Bao Diep, LMG at KBM)
Trude Haug Almestrand: DeepGene – improved prokaryotic gene finding (collaboration with Kristian Hovde Liland, Data Science at RealTek)
Ingvild Frøberg Mathisen: Comparing deep neural network architectures for the prediction of antibody/antigen binding (collaboration with Victor Greiff, UiO)
Helene Drennan Olsen: Reduced Metagenome Sequencing resolution in the human gut (collaboration with Knut Rudi, MiDiv, KBM)
Andrea Obstfelder: Comparative genomics of Salmonella Typhimurium in Norway (collaboration with Camilla Sekse, Karin Lagesen, Veterinary Institute)
Previous master projects
Here are some previous Master-projects where I was main supervisor:
Annette Fagerlund, 2021 (Confidential, at NOFIMA). Evolution and phylogenetics for Listeria monocytogenes
Abira Sivanesan, 2019 (Confidential, at FHI). In silico exploration of stx2apositive (STEC) and stx-negative Escherichia coli (STEC-LST)