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Master projects in microbial genomics |
Here
are some suggested master projects in microbial genomics.
A reduced version of some of these may also be used
for Bachelor projects.
Feel free to also suggest some projects on your own.
Send me an email if you want to discuss this with me.
Ongoing master projects
Nora
Bull: Ethnicity-associated
evolutionary patterns in human microRNA (collaboration with Simon Rayner, UiO)
Kristin Kleivan Solberg: Stress-tolerance associated genes
and antimicrobial resistance (collaboration with Dzung Bao Diep, LMG at KBM)
Trude
Haug Almestrand: DeepGene – improved prokaryotic gene finding
(collaboration with Kristian Hovde Liland, Data Science at RealTek)
Ingvild Frøberg Mathisen: Comparing deep neural network
architectures for the prediction of antibody/antigen binding (collaboration
with Victor Greiff, UiO)
Helene Drennan Olsen: Reduced Metagenome Sequencing
resolution in the human gut (collaboration with Knut Rudi, MiDiv, KBM)
Andrea Obstfelder: Comparative
genomics of Salmonella Typhimurium in Norway (collaboration with Camilla Sekse, Karin Lagesen,
Veterinary Institute)
Previous master projects
Here are some previous Master-projects where I was
main supervisor:
Annette Fagerlund, 2021 (Confidential, at NOFIMA). Evolution and phylogenetics for
Listeria monocytogenes
Kristina Severine Rudskjær Stenløkk, 2019
Maren-Helene Høie Degnes, 2019
Annbjørg Helene Nygaard Barbakken,
2019
Abira Sivanesan, 2019
(Confidential, at FHI). In silico exploration of stx2apositive (STEC) and stx-negative Escherichia coli (STEC-LST)