Lars Snipen
Norwegian University of Life Sciences


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BIN310 - Selected topics in microbial genomics

 

Updated September 2023

 

Here you find the RMarkdown files you need to follow this course. In the files you find further links to other resources.

 

Module 1 Getting started

 

Module 2 Sequencing

 

Module 3 K-mers and containers

 

Module 4 Assembly

 

Module 5 Alignments

 

Module 6 Annotations

 

Module 7 Comparative genomics

 

Module 8 MAGs

 

Module 9 Taxonomic classification

 

Module 10 Metabarcoding processing

 

Module 11 Metabarcoding analysis

 

Module 12 Hypothesis testing

 

 

 

Here are the assignments from 2023

 

Assignment 1 Data wrangling in R

 

Assignment 2 Assembly and feature search

 

Assignment 3 Comparative genomics

 

Assignment 4 Taxonomic classifiers

 

Assignment 5 Metabarcoding data